Social capital theory is of important theoretical value and really guiding significance to village community reconstruction in minority nationalities area. In the process of localized development of village community reconstruction in minority nationalities area in southeast Chongqing, social capital development has better real basis in the perspective of traditional authority, standardized participation and traditional communication and so on. With the rapid development of economic and social transition in minority nationalities area, social capital development faces the difficulties in the perspective of interpersonal relation, internal trust, community participation, community institution and community network and so on in rural community construction. Thus, Chongqing must make deep reflection, overall take all kinds of effective measures based on dual framework of coordinated development between nation and society by depending on the reality of social capital of reconstructed village community in minority nationalities area of southeast Chongqing, actively boost the cultivation and perfection of social capital in rural community in minority nationalities area of southeast Chongqing, promote overall development of rural community in this area and further realize the harmonious socialist village reconstruction of minority nationalities area.