This paper studies the diagnosis problems of generalized nonlinear regression model under data missing, under random missing of response variables, firstly uses empirical likelihood method to conduct parameter estimation, obtains its asymptotic confidence interval, then through random simulation and comparison, gets that empirical likelihood method is more superior than general methods in solving the asymptotic confidence interval, based on the analysis of the impact of the model, proposes the diagnosis statistical data such as empirical likelihood distance, empirical Cook distance, and standardized pseudoresiduals and finally uses examples to verify the effectiveness and feasibility of the statistical diagnosis method.